PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_882745936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 407aa    MW: 47594.4 Da    PI: 10.0306
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_882745936.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1644.3e-201195191
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                           ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak+ vk+  +g+w+++ +++eHnH+l
  Traes_6BL_882745936.1 11 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNHPL 93
                           69*******************9......4677******9988755543799999******************.9***************9 PP

                   FAR1 90 ap 91
                           +p
  Traes_6BL_882745936.1 94 SP 95
                           86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-191195IPR004330FAR1 DNA binding domain
PfamPF105514.9E-30217307IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKFPTLEDAH EYYNTYALQT GFVVVRGRNY KRQRFQLDCN RNRKVKLVED LNLKRKRKKN  60
VIEKTNCQAK IIVKLIKGEW VIAAVQNEHN HPLSPSRSFT RFLTSQKHMS PEERSFSRVL  120
QQSRVPPGEI LKILRRMSGF FRELPSKEKQ ALILQSAEQW RKANIDVEKT LNHLEELQLQ  180
DPCFFYTVQK DEDGMLRSIF WTDARSRMDY EIFGDFVSFD TTFSTNRHNM PFVPITGMNN  240
RGRTIVLGCA LLQDRKAETY KWMLQTFLQE MGGGQTPRSV ITSQDEAMAK AIAEVMPQAR  300
HRFCRWNGKA QEKMAAFVAA RGNMKAELDI LVDNSLTETE FEQGWSALIQ RHDASENEYL  360
QLLWEMRKTW APVYFMQDFF PFVVSARGSQ GAFSLFKENV LPXPRTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259LKRKRKKN
25458RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5GKV10.0W5GKV1_WHEAT; Uncharacterized protein
STRINGMLOC_44423.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-60FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]